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Count-based differential expression analysis of RNA sequencing
Aug 22, 2013 ... Software setup. Figure 1 | Count-based differential expression pipeline for RNA- seq data ..... http://bowtie-bio.sourceforge.net/index.shtml and ...
nprot.2013.099.pdf

Guidelines for RNA-Seq data analysis - EpiGeneSys
Mar 3, 2015 ... Having obtained the mapping of the RNA-Seq reads to the genome, the ..... transcriptome (Dobin et al, 2013) we use either bowtie (version 1, ...
20150303161357_p67.pdf

RNA-Seq - CBSU
RNA are sequenced using next-generation ... RNA-Seq: a revolutionary tool for transcriptomics Nat Rev Genet. ... Alignment tools: Bowtie, BWA, Eland etc.
day3_lecture1.pdf

Introduction to RNA-Seq - UC Davis Bioinformatics Core
RNA-Seq Statistics: Blythe Durbin-Johnson. Now that you're adept at running bioinformatics software, you'll be doing the exercises “on your own”. Don't worry if  ...
Th_MB_RNASeq_Intro.pdf

Overview of Statistical analysis of RNA-seq data - Stanford University
by RNA sequencing tagcttacc ... Stage 3: – Gene transcription analysis (for RNA- Seq) ... BOWTIE takes ~ 40 minutes on a 24-core server with large memory.
RNA-seq-talk-JSM2010.pdf

Introductory RNA-seq Transcriptome Profiling of the - iPlant Pods
hands on experience in using RNA-Seq for transcriptome profiling. ... RNA-seq data in Arabidopsis WT and hy5 genetic ... It uses the BOWTIE aligner internally.
Introductory_RNA-seq.ppt.pdf?version=1&modificationDate=1332345791000